GRAMM-X public web server for protein-protein docking

Tovchigrechko, Andrey; Vakser, Ilya A.

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Issue Date

2006-07-01

Author

Tovchigrechko, Andrey

Vakser, Ilya A.

Publisher

Oxford University Press

Type

Article

Article Version

Scholarly/refereed, publisher version

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Abstract

Protein docking software GRAMM-X and its web interface (http://vakser.bioinformatics.ku.edu/resources/gramm/grammx) extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software and maintaining large hardware resources needed for protein docking simulations. Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track.

Description

This is the publisher's version, also available electronically from "http://nar.oxfordjournals.org".

Citation

Tovchigrechko, A., & Vakser, I. (2006). GRAMM-X public web server for protein-protein docking. Nucleic Acids Research, 34(2), W310-W314. http://www.dx.doi.org/10.1093/nar/gkl206

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