GRAMM-X public web server for protein-protein docking
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Issue Date
2006-07-01Author
Tovchigrechko, Andrey
Vakser, Ilya A.
Publisher
Oxford University Press
Type
Article
Article Version
Scholarly/refereed, publisher version
Metadata
Show full item recordAbstract
Protein docking software GRAMM-X and its web interface (http://vakser.bioinformatics.ku.edu/resources/gramm/grammx) extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software and maintaining large hardware resources needed for protein docking simulations. Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track.
Description
This is the publisher's version, also available electronically from "http://nar.oxfordjournals.org".
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Citation
Tovchigrechko, A., & Vakser, I. (2006). GRAMM-X public web server for protein-protein docking. Nucleic Acids Research, 34(2), W310-W314. http://www.dx.doi.org/10.1093/nar/gkl206
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