Cycle Threshold Values in the Context of Multiple RT-PCR Testing for SARS-CoV-2
dc.contributor.author | Romero-Alvarez, Daniel | |
dc.contributor.author | Garzon-Chavez, Daniel | |
dc.contributor.author | Espinosa, Franklin | |
dc.contributor.author | Ligña, Edison | |
dc.contributor.author | Teran, Enrique | |
dc.contributor.author | Mora, Francisco | |
dc.contributor.author | Espin, Emilia | |
dc.contributor.author | Albán, Cristina | |
dc.contributor.author | Galarza, Juan Miguel | |
dc.contributor.author | Reyes, Jorge | |
dc.date.accessioned | 2022-01-03T19:23:28Z | |
dc.date.available | 2022-01-03T19:23:28Z | |
dc.date.issued | 2021-03-29 | |
dc.identifier.citation | Romero-Alvarez, D., Garzon-Chavez, D., Espinosa, F., Ligña, E., Teran, E., Mora, F., Espin, E., Albán, C., Galarza, J. M., & Reyes, J. (2021). Cycle Threshold Values in the Context of Multiple RT-PCR Testing for SARS-CoV-2. Risk management and healthcare policy, 14, 1311–1317. https://doi.org/10.2147/RMHP.S282962 | en_US |
dc.identifier.uri | http://hdl.handle.net/1808/32316 | |
dc.description.abstract | Purpose: Discharge or follow up of confirmed coronavirus disease 2019 (COVID-19) cases depend on accurate interpretation of RT-PCR. Currently, positive/negative interpretations are based on amplification instead of quantification of cycle threshold (Ct) values, which could be used as proxies of patient infectiousness. Here, we measured Ct values in hospitalized confirmed COVID-19 patients at different times and its implications in diagnosis and follow up. Patients and Methods: Observational study between March 17th-May 12th, 2020 using multiple RT-PCR testing. A cohort of 118 Hispanic hospitalized patients with confirmed COVID-19 diagnosis in a reference hospital in Quito, Ecuador. Multiple RT-PCR tests were performed using deep nasal swab samples and the assessment of SARS-CoV-2 genes N, RdRP, and E. Results: Patients’ median age was of 49 years (range: 24– 91) with a male majority (62.7%). We found increasing levels of Ct values in time, with a mean Ct value of 29.13 (n = 61, standard deviation (sd) = 5.55) for the first test and 34.38 (n = 60, sd = 4), 35.52 (n = 20, sd = 2.85), and 36.12 (n = 6, sd = 3.28), for the second, third, and fourth tests, respectively. Time to RT-PCR lack of amplification for all tests was of 34 days while time to RT-PCR Ct values > 33 was of 30 days. Conclusion: Cycle thresholds can potentially be used to improve diagnosis, management and control. We found that turnover time for negativity can be large for hospitalized patients and that 11% cases persisted with infectious Ct values for more time than the current isolation recommendations. | en_US |
dc.publisher | Dove Medical Press | en_US |
dc.rights | © 2021 Romero-Alvarez et al. This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License. | en_US |
dc.rights.uri | https://creativecommons.org/licenses/by-nc/3.0/ | en_US |
dc.subject | SARS-CoV-2 | en_US |
dc.subject | Coronavirus | en_US |
dc.subject | Pandemic | en_US |
dc.subject | Cycle thresholds | en_US |
dc.subject | RT-PCR | en_US |
dc.subject | Diagnosis | en_US |
dc.subject | COVID-19 | en_US |
dc.title | Cycle Threshold Values in the Context of Multiple RT-PCR Testing for SARS-CoV-2 | en_US |
dc.type | Article | en_US |
kusw.kuauthor | Romero-Alvarez, Daniel | |
kusw.kudepartment | Biodiversity Institute | en_US |
kusw.kudepartment | Ecology & Evolutionary Biology | en_US |
dc.identifier.doi | 10.2147/RMHP.S282962 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0002-6762-6046 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0002-8024-3509 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0002-9905-1785 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0002-5830-1418 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0001-6979-5655 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0003-1704-0159 | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0002-1797-937X | en_US |
dc.identifier.orcid | https://orcid.org/ 0000-0002-5215-164X | en_US |
kusw.oaversion | Scholarly/refereed, publisher version | en_US |
kusw.oapolicy | This item meets KU Open Access policy criteria. | en_US |
dc.identifier.pmid | PMC8018360 | en_US |
dc.rights.accessrights | openAccess | en_US |
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Except where otherwise noted, this item's license is described as: © 2021 Romero-Alvarez et al. This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License.