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Grapevine bacterial communities display compartment-specific dynamics over space and time within the Central Valley of California
dc.contributor.author | Swift, Joel F. | |
dc.contributor.author | Migicovsky, Zoë | |
dc.contributor.author | Trello, Grace E | |
dc.contributor.author | Miller, Allison J. | |
dc.date.accessioned | 2024-06-11T18:24:17Z | |
dc.date.available | 2024-06-11T18:24:17Z | |
dc.date.issued | 2023-11-23 | |
dc.identifier.citation | Swift JF, Migicovsky Z, Trello GE, Miller AJ. Grapevine bacterial communities display compartment-specific dynamics over space and time within the Central Valley of California. Environ Microbiome. 2023 Nov 23;18(1):84. doi: 10.1186/s40793-023-00539-0. PMID: 37996903; PMCID: PMC10668525 | en_US |
dc.identifier.uri | https://hdl.handle.net/1808/35124 | |
dc.description.abstract | Background Plant organs (compartments) host distinct microbiota which shift in response to variation in both development and climate. Grapevines are woody perennial crops that are clonally propagated and cultivated across vast geographic areas, and as such, their microbial communities may also reflect site-specific influences. These site-specific influences along with microbial differences across sites compose ‘terroir’, the environmental influence on wine produced in a given region. Commercial grapevines are typically composed of a genetically distinct root (rootstock) grafted to a shoot system (scion) which adds an additional layer of complexity via genome-to-genome interactions.Results To understand spatial and temporal patterns of bacterial diversity in grafted grapevines, we used 16S rRNA amplicon sequencing to quantify soil and compartment microbiota (berries, leaves, and roots) for grafted grapevines in commercial vineyards across three counties in the Central Valley of California over two successive growing seasons. Community composition revealed compartment-specific dynamics. Roots assembled site-specific bacterial communities that reflected rootstock genotype and environment influences, whereas bacterial communities of leaves and berries displayed associations with time.Conclusions These results provide further evidence of a microbial terroir within the grapevine root systems but also reveal that the microbiota of above-ground compartments are only weakly associated with the local soil microbiome in the Central Valley of California.Supplementary Information The online version contains supplementary material available at 10.1186/s40793-023-00539-0. | en_US |
dc.publisher | BMC | en_US |
dc.rights | Copyright © The Author(s) 2023 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. | en_US |
dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ | en_US |
dc.subject | Microbiome | en_US |
dc.subject | Grapevine | en_US |
dc.subject | Grafting | en_US |
dc.subject | California | en_US |
dc.subject | Central Valley | en_US |
dc.subject | Amplicon sequencing | en_US |
dc.title | Grapevine bacterial communities display compartment-specific dynamics over space and time within the Central Valley of California | en_US |
dc.type | Article | en_US |
kusw.kuauthor | Swift, Joel F. | |
kusw.kudepartment | Kansas Biological Survey and Center for Ecological Research | en_US |
dc.identifier.doi | 10.1186/s40793-023-00539-0 | en_US |
kusw.oaversion | Scholarly/refereed, publisher version | en_US |
kusw.oapolicy | This item meets KU Open Access policy criteria. | en_US |
dc.identifier.pmid | PMC10668525 | en_US |
dc.rights.accessrights | openAccess | en_US |
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Except where otherwise noted, this item's license is described as: Copyright © The Author(s) 2023
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.