dc.contributor.advisor | Heckert, Leslie L | |
dc.contributor.author | Dille, Elizabeth A. | |
dc.date.accessioned | 2013-09-29T13:49:30Z | |
dc.date.available | 2013-09-29T13:49:30Z | |
dc.date.issued | 2013-05-31 | |
dc.date.submitted | 2013 | |
dc.identifier.other | http://dissertations.umi.com/ku:12722 | |
dc.identifier.uri | http://hdl.handle.net/1808/12175 | |
dc.description.abstract | Mechanisms that regulate gene expression are fundamental to many complex biological processes and disease states. Genome-wide approaches that combine chromatin-immunoprecipitation (ChIP) and next-generation sequencing have greatly advanced our understanding of chromatin structure and the role that histone modification plays in transcriptional regulation. In particular, these advances revealed important associations between functional, non-coding DNAs and specific histone modifications, which have been used technically to identify numerous distal regulatory elements and furthered our knowledge of transcriptional regulation and cell-specific gene regulation. Fshr is a gene expressed only in testicular Sertoli cells and ovarian granulosa cells and its expression is critical for proper gonad function and fertility. Importantly, underlying its exquisite cell-specificity is a transcriptional mechanism limited to only two cell types, which previous studies revealed was dependent on distal regulatory elements. To help identify these elements, we used ChIP, combined with next-generation sequencing, to globally map Histone 3 Lysine 4 tri-methylation (H3K4me3) in Sertoli and myoid cells. H3K4me3 is a post-translational histone modification known to associate with distal regulatory elements and promoter regions of actively transcribed genes. Analysis of H3K4me3 enrichment profiles identified a distal site 3' to Fshr that was specific to Sertoli cells. Transient transfection analysis indicated the region represses Fshr promoter activity and in vitro binding analysis revealed that GATA-4 and an unknown protein bound to the region, implicating them in cell-specific regulation of Fshr. These studies provide evidence that Fshr is regulated by a distal regulatory element and have provided insight into the nature of these regulatory proteins. This work provides a database mapping H3K4me3 enrichment within Sertoli and peritubular myoid cells that can be used to identify new regulatory regions. Overall, these studies have furthered our knowledge of cell-specific gene regulation in Sertoli cells and provided new data that will lead to a better understanding of transcriptional regulation in Sertoli cells. | |
dc.format.extent | 247 pages | |
dc.language.iso | en | |
dc.publisher | University of Kansas | |
dc.rights | This item is protected by copyright and unless otherwise specified the copyright of this thesis/dissertation is held by the author. | |
dc.subject | Biology | |
dc.subject | Endocrinology | |
dc.subject | Genetics | |
dc.subject | Distal regulatory elements | |
dc.subject | Fshr | |
dc.subject | Sertoli cells | |
dc.title | THE APPLICATION OF HISTONE ANALYSIS FOR IDENTIFYING DISTAL REGULATORY ELEMENTS - REGULATION OF FSHR | |
dc.type | Dissertation | |
dc.contributor.cmtemember | Albertini, David F. | |
dc.contributor.cmtemember | Chennathukuzhi, Vargheese M. | |
dc.contributor.cmtemember | Fields, Patrick E | |
dc.contributor.cmtemember | Peterson, Kenneth R. | |
dc.thesis.degreeDiscipline | Molecular & Integrative Physiology | |
dc.thesis.degreeLevel | Ph.D. | |
kusw.oastatus | na | |
kusw.oapolicy | This item does not meet KU Open Access policy criteria. | |
kusw.bibid | 8086071 | |
dc.rights.accessrights | openAccess | |