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Dataset on the epidemiology and genetic diversification of dengue virus (DENV) serotypes and genotypes in Mexico
Domínguez-de-la-Cruz, Eduardo de Lourdes Muñoz, María Hernández-García, Ericel Pérez-Ramírez, Gerardo David, Randy E. Navarrete-Espinosa, Joel Díaz-Badillo, Álvaro Moreno-Galeana, Miguel Brito-Carreón, Cesar Armando
Domínguez-de-la-Cruz, Eduardo
de Lourdes Muñoz, María
Hernández-García, Ericel
Pérez-Ramírez, Gerardo
David, Randy E.
Navarrete-Espinosa, Joel
Díaz-Badillo, Álvaro
Moreno-Galeana, Miguel
Brito-Carreón, Cesar Armando
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Abstract
Dengue virus (DENV) evolution has had a significant impact on disease pathogenesis, virulence, and epidemiology in Mexico. Novel genotypic variation in DENV serotypes and genotypes may influence the magnitude and severity of dengue epidemics, as evidenced by 2009 data from Veracruz State. The data presented herein is related to the publication entitled “Epidemiological Implications of the Genetic Diversification of Dengue Virus (DENV) Serotypes and Genotypes in Mexico” [1]. Raw data and trees provide epidemiological data on DENV prevalence and a comprehensive phylogeny of both representative sequences collected from an NCBI repository, and 28 additional isolates from acute-phase plasma samples diagnosed with dengue fever or severe dengue (Raw sequencing data is hosted in the public repository Mendeley Data (http://dx.doi.org/10.17632/bf2kdhhf6x.2). Phylogenetic trees for each DENV serotype (DENV-1, -2, -3 and -4) were constructed using these sequences by a maximum likelihood methodology as well as a Bayesian Markov chain Monte Carlo (MCMC) integration approach. Phylogenetic trees exhibited: (1) DENV-1, genotype V, (2) the DENV-2 Asian/American and Asian II genotypes, (3) DENV-3, genotype III, and (4) DENV-4, genotype I. This data can be beneficial for future analyses on DENV serotype and genotype structure and the introduction of novel DENV genotype sequences in the Americas, for the further elucidation of dengue etiology.
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This work is licensed under a Creative Commons Attribution 4.0 International License.
Date
2020-07-29
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Elsevier
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Keywords
Dengue fever, DENV genotypes, DENV serotypes, Epidemiology, Evolutionary virology, Introduction of novel genotypes, Phylogeny, Severe dengue
Citation
Domínguez-de-la-Cruz, E., Muñoz, M. L., Hernández-García, E., Pérez-Ramírez, G., David, R. E., Navarrete-Espinosa, J., Díaz-Badillo, Á., Moreno-Galeana, M., & Brito-Carreón, C. A. (2020). Dataset on the epidemiology and genetic diversification of dengue virus (DENV) serotypes and genotypes in Mexico. Data in brief, 32, 106077. https://doi.org/10.1016/j.dib.2020.106077